OncoDB.HCC Expression View

Gene name : PTPN13
Ensembl ID ENSG00000163629
Description Tyrosine-protein phosphatase non-receptor type 13 (EC 3.1.3.48) (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1) (PTP-BAS) (Protein-tyrosine phosphatase PTPL1) (Fas-associated protein-tyrosine phosphatase 1) (FAP-1). [Source:Uniprot/SWISSPROT;Acc:Q12923]
HCC significant gene
Significantly up- or down- regulated in at least three independent HCC microarray/proteomic reports.
At least 2 folds expression change in more than 70% patients in reprocessed Stanford HCC microarray data.
16 percent with 2 folds change ( 0 up and 9 down in 54 paired-arrays )
With wet-lab experimental data from previous reports.
Experimental evidence down     Method -- QPCR, Methylation    
>> Link to terminologies used in OncoDB.HCC
Links Entrez Gene     Entrez Gene     Entrez Gene    
Display nearby genome region Chr 4 from 82734909 bp to 92955326 bp

Standford microarray data
Re-analysis of Stanford microarray data
IMAGE clone 866702 -- IMAGE clone locate on exon ( tblastx )
CH2 (0.00) HK1 (-0.46) HK3 (-0.29) HK4 (-0.11) HK5 (0.00) HK7 (-1.16) HK9 (-0.01) HK11 (-1.06) HK12 (-0.22) HK13 (0.04) HK14 (-0.32) HK15 (-0.00) HK16 (-0.96) HK18 (-0.30) HK19 (0.30) HK20 (0.37) HK21 (-0.96) HK22 (-0.21) HK24 (-0.67) HK27 (-0.59) HK28 (0.03) HK29 (-0.60) HK31 (-0.36) HK33 (-0.41) HK36 (-0.19) HK37 (-0.57) HK38 (-1.01) HK39 (-0.40) HK42 (-0.47) HK46 (0.25) HK47 (-0.09) HK49 (-1.19) HK62 (-1.14) HK63 (0.15) HK64 (0.00) HK67 (-0.20) HK84 (0.68) HK85 (-0.92) SF1 (-0.10) SF12 (-1.41) SF15 (-1.21) SF17 (0.36) SF18 (0.00) SF21 (-1.88) SF22 (-1.57) SF23 (0.71) SF32 (0.09) SF34 (-0.19) SF35 (-0.69) SF3 (-0.63) SF30 (-0.89) HK2 (0.07) HK23 (-0.01) HK41 (-0.34) SF4 (-0.20) SF8 (-0.37) SF9 (-0.82)